PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041534
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family NAC
Protein Properties Length: 248aa    MW: 27101.7 Da    PI: 8.7553
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041534genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM112.35.3e-35181481128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgkrknra..tksgyWkatgkdkevlsk 95 
                  lp G+rF+Ptdeel+v+yL++kv g +l++ +vi+e+d+++++P +Lp +  +  ++ yfF+k++ + a  g+r   +     gyWk+t k ++++s+
  Lus10041534  18 LPIGVRFRPTDEELIVHYLRRKVLGLPLPA-SVISELDVFHTHPCSLPGNS-SCWEKRYFFCKKEGNVAgAGNRGGGVsgCGGGYWKHTRKARHIVSS 113
                  699***************************.99***************433.345677*****99988734666655423459**************9 PP

          NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                    +++lvg++++Lvf k++a++ ++t+Wvmhe+ l
  Lus10041534 114 scNNQLVGMRTSLVFRKQNASHHSNTKWVMHEFCL 148
                  999999***************************87 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-4115176IPR003441NAC domain
PROSITE profilePS5100540.01418176IPR003441NAC domain
PfamPF023651.0E-2119147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MEAKQNMVVN GGGGIKVLPI GVRFRPTDEE LIVHYLRRKV LGLPLPASVI SELDVFHTHP  60
CSLPGNSSCW EKRYFFCKKE GNVAGAGNRG GGVSGCGGGY WKHTRKARHI VSSSCNNQLV  120
GMRTSLVFRK QNASHHSNTK WVMHEFCLVG LATIPFTNQV AKVQLGDWVV CSVFQKKKRH  180
SNSNMKKPPN PIEFRMEELS DRGPEEEEEP GSPCSSGVTE LSNSTSYSSN GVDGEGDINS  240
FNVSFSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D4e-251817720169NAC domain-containing protein 19
3swp_C4e-251817720169NAC domain-containing protein 19
3swp_B4e-251817720169NAC domain-containing protein 19
3swp_A4e-251817720169NAC domain-containing protein 19
3swm_D4e-251817720169NAC domain-containing protein 19
3swm_C4e-251817720169NAC domain-containing protein 19
3swm_B4e-251817720169NAC domain-containing protein 19
3swm_A4e-251817720169NAC domain-containing protein 19
4dul_B4e-251817717166NAC domain-containing protein 19
4dul_A4e-251817717166NAC domain-containing protein 19
1ut7_B4e-251817717166NO APICAL MERISTEM PROTEIN
1ut7_A4e-251817717166NO APICAL MERISTEM PROTEIN
1ut4_B4e-251817717166NO APICAL MERISTEM PROTEIN
1ut4_A4e-251817717166NO APICAL MERISTEM PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002512886.17e-63PREDICTED: NAC domain-containing protein 83
TrEMBLB9RH278e-63B9RH27_RICCO; Transcription factor, putative
STRINGPOPTR_0001s33260.18e-59(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.13e-33NAC domain containing protein 84